Package: pactr 0.0.0.9000

Ernest Guevarra

pactr: An Interface to the Pandemic PACT Database

The Pandemic PACT <https://www.pandemicpact.org/> monitors and analyses global funding and research evidence related to diseases with pandemic potential, as well as broader research preparedness efforts, and is equipped to pivot in response to outbreaks. It collects, curates, codes, and analyses data in alignment with WHO priority diseases and other selected illnesses, including pandemic influenza, mpox, and plague. Pandemic PACT aims to guide policy and decision-making for research funders, policymakers, researchers, multilateral agencies. The database is publicly available for download from its website and from Figshare. This package interfaces with the project's Figshare repository to provide programmatic access to the database along with other data products provided by the project.

Authors:Ernest Guevarra [aut, cre]

pactr_0.0.0.9000.tar.gz
pactr_0.0.0.9000.zip(r-4.5)pactr_0.0.0.9000.zip(r-4.4)pactr_0.0.0.9000.zip(r-4.3)
pactr_0.0.0.9000.tgz(r-4.4-any)pactr_0.0.0.9000.tgz(r-4.3-any)
pactr_0.0.0.9000.tar.gz(r-4.5-noble)pactr_0.0.0.9000.tar.gz(r-4.4-noble)
pactr_0.0.0.9000.tgz(r-4.4-emscripten)pactr_0.0.0.9000.tgz(r-4.3-emscripten)
pactr.pdf |pactr.html
pactr/json (API)
NEWS

# Install 'pactr' in R:
install.packages('pactr', repos = c('https://oxfordihtm.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/oxfordihtm/pactr/issues

Datasets:

On CRAN:

4.07 score 1 stars 13 scripts 25 exports 41 dependencies

Last updated 21 days agofrom:949c74d8a8. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winOKNov 14 2024
R-4.5-linuxOKNov 14 2024
R-4.4-winNOTENov 14 2024
R-4.4-macNOTENov 14 2024
R-4.3-winNOTENov 14 2024
R-4.3-macNOTENov 14 2024

Exports:pact_citepact_client_setpact_download_figsharepact_download_figshare_privatepact_download_websitepact_get_filenamepact_get_group_idpact_listpact_list_datapact_list_downloadpact_process_figsharepact_process_figshare_categorypact_process_figshare_category_funderpact_process_figshare_category_pathogenpact_process_websitepact_read_figsharepact_read_figshare_dictionarypact_read_figshare_downloadpact_read_websitepact_table_categorypact_table_diseasepact_table_location_funderpact_table_location_institutionpact_table_location_researchpact_table_topic_group

Dependencies:askpassbackportscheckmateclicountrycodecpp11curldepositsdplyrfansifsgenericsglueherehttr2jsonlitejsonvalidatelifecyclemagrittropensslopenxlsx2pillarpkgconfigpurrrR6rappdirsRcpprlangrprojrootstringistringrsystibbletidyrtidyselectutf8V8vctrswithrxml2zip

Figshare workflow

Rendered fromfigshare-workflow.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2024-10-30
Started: 2024-09-16

Introducing {pactr}

Rendered frompactr.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2024-09-17
Started: 2024-09-17

Website dataset workflow

Rendered fromwebsite-dataset-workflow.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2024-10-30
Started: 2024-09-17

Readme and manuals

Help Manual

Help pageTopics
Cite an output/asset available from the Pandemic PACT Figshare repositorypact_cite
Initiate a new Pandemic PACT Figshare client sessionpact_client_set
Download outputs/assets from Pandemic PACT Figshare repositorypact_download_figshare pact_download_figshare_private pact_download_website
Get outputs/assets identifierspact_get_filename pact_get_group_id
List all available outputs/assets from Pandemic PACT's Figshare repositorypact_list pact_list_data pact_list_download
Pandemic PACT Mpox Prioritiespact_mpox_priority
Process Pandemic PACT datapact_process_figshare pact_process_figshare_category pact_process_figshare_category_funder pact_process_figshare_category_pathogen
Process Pandemic PACT dataset retrieved from the websitepact_process_website
Read datasets from the Pandemic PACT Figshare repositorypact_read_figshare pact_read_figshare_dictionary pact_read_figshare_download
Read datasets from the Pandemic PACT websitepact_read_website
Pandemic PACT Research Categoriespact_research_category
Process variable of interest from Pandemic PACT website data by a grouping variablepact_table_category pact_table_disease pact_table_location_funder pact_table_location_institution pact_table_location_research pact_table_topic_group
World Health Organization (WHO) Country Informationwho_country_info